RStudio implements something called “R-flavoured markdown” or “RMarkdown” which has really nice features for text and code formatting as described below.Īs RMarkdown grows as an acceptable reproducible manuscript format, using knitr to generate a report summary is becoming common practice. The Markdown language for formatting plain text format has been adopted by many different coding groups, and some have added their own “flavours”. Two files ( and mouse_exp_design.csv) are located inside the data folder.The data folder is in the same directory as workshop-example.rmd file. Note: If you run into error when kniting the markdown, make sure your data structure is set properly as below:
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